Recent Publications
All Publications
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2026
FlowLOT: Linearized Optimal Transport for Flow Cytometry Analysis
arXiv preprint arXiv:2609.17906, 2026
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2026
Reduced Order Modeling of One-Dimensional Conservative PDEs via the Cumulative Distribution Transform
arXiv preprint arXiv:2607.17066, 2026
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2026
A Discrete Cumulative Distribution Transform via Optimal Transport
arXiv preprint arXiv:2606.12131, 2026 Cited: 1
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2026
3D Transport-based Morphometry (3D-TBM) for medical image analysis
arXiv preprint arXiv:2602.07260, 2026
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2025
Predictive modeling of hematoma expansion from non-contrast computed tomography in spontaneous intracerebral hemorrhage patients
Elife 14, RP105782, 2025 Cited: 2
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2025
Augmenting early stroke diagnosis with an eye-tracker
Frontiers in Neurology 16, 1632939, 2025 Cited: 2
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2025
Quantitative Morphometric Analysis of Oral Epithelial Dysplasia using Deep Learning-Based Nuclear Segmentation
Conference on Graphics, Patterns and Images (SIBGRAPI), 386-390, 2025
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2025
Corrosion detection from IR thermal images in signed cumulative distribution transform domain
NDT & E International 154, 103390, 2025 Cited: 9
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2025
Linear optimal transport subspaces for point set classification
Journal of mathematical imaging and vision 67 (4), 43, 2025 Cited: 2
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2025
Local sliced Wasserstein feature sets for illumination invariant face recognition
Pattern recognition 162, 111381, 2025 Cited: 21
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2025
An Efficient Transport-Based Dissimilarity Measure for Time Series Classification under Warping Distortions
arXiv preprint arXiv:2505.05676, 2025
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2025
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2025
Quantifying nuclear structures of digital pathology images across cancers using transport‐based morphometry
Cytometry Part A 107 (2), 98-110, 2025 Cited: 8
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2024
Cell Classification Based on Superpixel Segmentation and Transport-Based Morphometry
2024 37th SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), 1-6, 2024 Cited: 1
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2024
Data representation with optimal transport
arXiv preprint arXiv:2406.15503, 2024 Cited: 5
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2024
Discovering the gene-brain-behavior link in autism via generative machine learning
Science advances 10 (24), eadl5307, 2024 Cited: 24
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2024
Lcot: Linear circular optimal transport
International Conference on Learning Representations 2024, 6854-6877, 2024 Cited: 8
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2024
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2024
Data-driven identification of parametric governing equations of dynamical systems using the signed cumulative distribution transform
Computer methods in applied mechanics and engineering 422, 116822, 2024 Cited: 8
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2024
Unraveling the complexity of thrombosis through high-speed optical imaging on a chip
High-Speed Biomedical Imaging and Spectroscopy IX, PC128530J, 2024
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2024
End-to-end signal classification in signed cumulative distribution transform space
IEEE Transactions on Pattern Analysis and Machine Intelligence 46 (9), 5936-5950, 2024 Cited: 30
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2023
The Radon Signed Cumulative Distribution Transform and Its Applications in Classification of Signed Images
arXiv preprint arXiv:2307.15339, 2023 Cited: 4
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2023
THE RADON SIGNED CUMULATIVE DISTRIBUTION TRANSFORM AND ITS APPLICATIONS IN CLASSIFICATION OF SIGNED IMAGES
arXiv preprint arXiv:2307.15339, 2023
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2023
A digital camera-based eye movement assessment method for NeuroEye examination
IEEE Journal of Biomedical and Health Informatics 28 (2), 655-665, 2023 Cited: 9
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2023
Real‐time intelligent classification of COVID‐19 and thrombosis via massive image‐based analysis of platelet aggregates
Cytometry Part A 103 (6), 492-499, 2023 Cited: 17
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2023
Transport model for the propagation of partially coherent, partially polarized, polarization-gradient vector beams
Journal of the Optical Society of America A 40 (6), 1084-1100, 2023 Cited: 4
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2023
A novel artificial intelligence method for predicting hematoma growth in spontaneous intracerebral hemorrhage patients
JOURNAL OF NEUROSURGERY 138 (5), 2023
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2023
Invariance encoding in sliced-Wasserstein space for image classification with limited training data
Pattern recognition 137, 109268, 2023 Cited: 12
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2023
Predicting malignancy of breast imaging findings using quantitative analysis of contrast-enhanced mammography (CEM)
Diagnostics 13 (6), 1129, 2023 Cited: 10
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2023
Uncovering the long-term effects of mRNA COVID-19 vaccinations on platelets by high-speed optical imaging on a chip (Conference Presentation)
High-Speed Biomedical Imaging and Spectroscopy VIII, PC123900P, 2023
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2023
A sliced-Wasserstein distance-based approach for out-of-class-distribution detection
arXiv preprint arXiv:2302.01459, 2023 Cited: 2
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2023
Long‐term effects of Pfizer‐BioNTech COVID‐19 vaccinations on platelets
Cytometry Part A 103 (2), 162-167, 2023 Cited: 25
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2023
System and method for automated detection of neurological deficits
US Patent 11,540,749, 2023 Cited: 8
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2023
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2022
Approach to quantify eye movements to augment stroke diagnosis with a non-calibrated eye-tracker
IEEE Transactions on Biomedical Engineering 70 (6), 1750-1757, 2022 Cited: 18
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2022
Geodesic properties of a generalized wasserstein embedding for time series aanalysis
Topological, Algebraic and Geometric Learning Workshops 2022, 216-225, 2022 Cited: 4
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2022
Learning energy-based models with adversarial training
European Conference on Computer Vision, 209-226, 2022 Cited: 17
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2022
System, Method and Computer Readable Medium for Video-Based Facial Weakness Analysis for Detecting Neurological Deficits
US Patent App. 17/665,334, 2022
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2022
Signed cumulative distribution transform for parameter estimation of 1-d signals
arXiv preprint arXiv:2207.07989, 2022 Cited: 3
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2022
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2022
Human vs. machine learning based detection of facial weakness using video analysis
Frontiers in neurology 13, 878282, 2022 Cited: 26
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2022
Nearest subspace search in the signed cumulative distribution transform space for 1d signal classification
ICASSP 2022-2022 IEEE International Conference on Acoustics, Speech and …, 2022 Cited: 15
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2022
Methods, apparatuses and systems for time delay estimation
US Patent 11,290,212, 2022
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2022
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2022
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2021
Massive image-based single-cell profiling reveals high levels of circulating platelet aggregates in patients with COVID-19
Nature communications 12 (1), 7135, 2021 Cited: 104
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2021
Investigating impact of cardiorespiratory fitness in reducing brain tissue loss caused by ageing
Brain Communications 3 (4), fcab228, 2021 Cited: 11
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2021
Edge feature enhancement approach using hilbert transform of Cauchy distribution and its applications
IET Image Processing 15 (12), 2891-2909, 2021 Cited: 15
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2021
Radon cumulative distribution transform subspace modeling for image classification
Journal of Mathematical Imaging and Vision, 1-19, 2021 Cited: 32
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2021
A pilot study on video-based eye movement assessment of the neuroeye examination
2021 IEEE EMBS International Conference on Biomedical and Health Informatics …, 2021 Cited: 2
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2021
Transport-based pattern recognition versus deep neural networks in underwater OAM communications
Journal of the Optical Society of America A 38 (7), 954-962, 2021 Cited: 17
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2021
The signed cumulative distribution transform for 1-D signal analysis and classification
arXiv preprint arXiv:2106.02146, 2021 Cited: 26
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2021
Partitioning signal classes using transport transforms for data analysis and machine learning
Sampling theory, signal processing, and data analysis 19 (1), 6, 2021 Cited: 30
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2021
Understanding microvascular thrombosis in COVID-19 via massive single-cell imaging of circulating platelets
medRxiv, 2021.04. 29.21256354, 2021 Cited: 1
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2021
The landscape of circulating platelet aggregates in COVID-19
medRxiv, 2021 Cited: 1
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2021
Comparison of Calibration vs Non-calibration Techniques in the Automated Capture Of Eye Movement Data: Initial Validation of the ROADIE Device (4324)
Neurology 96 (15_supplement), 4324, 2021
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2021
REPLY TO ROEMER AND GUERMAZI
Proceedings of the National Academy of Sciences of the United States of …, 2021
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2021
Reply to Roemer and Guermazi: Early biochemical changes on MRI can predict risk of symptomatic progression
Proceedings of the National Academy of Sciences 118 (11), e2024679118, 2021
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2021
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2021
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2021
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2021
Video-based facial weakness analysis
IEEE Transactions on Biomedical Engineering 68 (9), 2698-2705, 2021 Cited: 31
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2020
Poster: A Pilot Study on Camera-Based Neurological Deficit Detection
2020 IEEE/ACM International Conference on Connected Health: Applications …, 2020 Cited: 2
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2020
Discretized target size detection in electrical impedance tomography using neural network classifier
Journal of Nondestructive Evaluation 39 (4), 79, 2020 Cited: 5
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2020
Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning
Proceedings of the National Academy of Sciences 117 (40), 24709-24719, 2020 Cited: 70
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2020
Neural networks, hypersurfaces, and the generalized radon transform [lecture notes]
IEEE signal processing magazine 37 (4), 123-133, 2020 Cited: 6
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2020
Wasserstein embedding for graph learning
arXiv preprint arXiv:2006.09430, 2020 Cited: 135
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2020
Parametric signal estimation using the cumulative distribution transform
IEEE Transactions on Signal Processing 68, 3312-3324, 2020 Cited: 22
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2020
Cell image classification: a comparative overview
Cytometry Part A 97 (4), 347-362, 2020 Cited: 51
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2020
Facial weakness analysis and quantification of static images
IEEE journal of biomedical and health informatics 24 (8), 2260-2267, 2020 Cited: 41
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2020
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2019
An in-depth survey of underwater image enhancement and restoration
IEEE access 7, 123638-123657, 2019 Cited: 239
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2019
Assessing postconcussive reaction time using transport-based morphometry of diffusion tensor images
American Journal of Neuroradiology 40 (7), 1117-1123, 2019 Cited: 10
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2019
Methods to label, image, and analyze the complex structural architectures of microvascular networks
Microcirculation 26 (5), e12520, 2019 Cited: 105
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2019
Gat: Generative adversarial training for adversarial example detection and robust classification
arXiv preprint arXiv:1905.11475, 2019 Cited: 99
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2019
F-DIT-V: An automated video classification tool for facial weakness detection
2019 IEEE EMBS International Conference on Biomedical & Health Informatics …, 2019 Cited: 11
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2019
A transport model for broadening of a linearly polarized, coherent beam due to inhomogeneities in a turbulent atmosphere
Journal of Modern Optics 66 (8), 835-849, 2019 Cited: 10
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2019
Divide-and-conquer adversarial detection
CoRR, abs/1905.11475, 2019 Cited: 5
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2019
Abstract TP274: Comparison of Human and Machine Learning Based Facial Weakness Detection
Stroke 50 (Suppl_1), ATP274-ATP274, 2019 Cited: 2
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2019
CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures
Bioinformatics 35 (3), 506-514, 2019 Cited: 5
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2019
Time delay estimation via Wasserstein distance minimization
IEEE Signal Processing Letters 26 (6), 908-912, 2019 Cited: 15
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2019
Generalized sliced wasserstein distances
Advances in neural information processing systems 32, 2019 Cited: 580
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2018
Label-efficient breast cancer histopathological image classification
IEEE Journal of biomedical and health informatics 23 (5), 2108-2116, 2018 Cited: 92
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2018
The cumulative distribution transform and linear pattern classification
Applied and computational harmonic analysis 45 (3), 616-641, 2018 Cited: 96
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2018
Sliced Wasserstein auto-encoders
International Conference on Learning Representations, 2018 Cited: 271
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2018
ABI: Innovation: Analyzing Neuroglial Cell Dynamics in their Natural Environment with Video Microscopy
NSF Award Number 1759802. Directorate for Biological Sciences 17 (1759802 …, 2018
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2018
Sliced wasserstein distance for learning gaussian mixture models
2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 3427-3436, 2018 Cited: 227
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2018
Transport-based model for turbulence-corrupted imagery
Applied optics 57 (16), 4524-4536, 2018 Cited: 27
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2018
Automated Detection of Facial Weakness Using Machine Learning (S40. 001)
Neurology 90 (15_supplement), S40. 001, 2018
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2018
Sliced-wasserstein autoencoder: An embarrassingly simple generative model
arXiv preprint arXiv:1804.01947, 2018 Cited: 127
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2018
Pathological facial weakness detection using computational image analysis
2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018 …, 2018 Cited: 17
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2018
Training classifiers with limited data using the Radon cumulative distribution transform
Medical Imaging 2018: Image Processing 10574, 713-719, 2018 Cited: 2
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2018
Detecting mammographically occult cancer in women with dense breasts using Radon Cumulative Distribution Transform: a preliminary analysis
Medical Imaging 2018: Computer-Aided Diagnosis 10575, 46-51, 2018 Cited: 11
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2018
Transport-Based Pattern Theory: A Signal Transformation Approach
arXiv preprint arXiv:1802.07163, 2018
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2018
Discovery and visualization of structural biomarkers from MRI using transport-based morphometry
NeuroImage 167, 256-275, 2018 Cited: 34
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2018
SetSVM: an approach to set classification in nuclei-based cancer detection
IEEE journal of biomedical and health informatics 23 (1), 351-361, 2018 Cited: 29
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2018
De-multiplexing vortex modes in optical communications using transport-based pattern recognition
Optics express 26 (4), 4004-4022, 2018 Cited: 104
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2018
Abstract WP246: Automated Detection of Facial Weakness Using Machine Learning
Stroke 49 (Suppl_1), AWP246-AWP246, 2018
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2017
Reconstructing high-resolution cardiac MR movies from under-sampled frames
2017 51st Asilomar Conference on Signals, Systems, and Computers, 1255-1259, 2017 Cited: 4
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2017
A Transportation Lp\documentclass [12pt]{minimal}\usepackage {amsmath}\usepackage {wasysym}\usepackage {amsfonts}\usepackage {amssymb}\usepackage {amsbsy}\usepackage {mathrsfs …
Journal of Mathematical Imaging and Vision 59 (2), 187-210, 2017
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2017
A TransportationDistance for Signal Analysis
Journal of mathematical imaging and vision 59 (2), 187-210, 2017 Cited: 100
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2017
Quantitative comparison of image data using a linear optimal transportation
US Patent 9,727,581, 2017
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2017
Optimal mass transport: Signal processing and machine-learning applications
IEEE signal processing magazine 34 (4), 43-59, 2017 Cited: 775
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2017
Epithelium-stroma classification via convolutional neural networks and unsupervised domain adaptation in histopathological images
IEEE journal of biomedical and health informatics 21 (6), 1625-1632, 2017 Cited: 98
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2017
Epithelium-stroma classification in histopathological images via convolutional neural networks and self-taught learning
2017 IEEE international conference on acoustics, speech and signal …, 2017 Cited: 5
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2017
Analysis of live cell images: Methods, tools and opportunities
Methods 115, 65-79, 2017 Cited: 97
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2017
Impact of altering various image parameters on human epidermal growth factor receptor 2 image analysis data quality
Journal of Pathology Informatics 8 (1), 39, 2017 Cited: 25
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2017
Predictive nuclear chromatin characteristics of melanoma and dysplastic nevi
Journal of Pathology Informatics 8 (1), 15, 2017 Cited: 16
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2016
A supervised learning framework for pancreatic islet segmentation with multi‐scale color‐texture features and rolling guidance filters
Cytometry Part A 89 (10), 893-902, 2016 Cited: 7
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2016
Hierarchical feature extraction for nuclear morphometry-based cancer diagnosis
International Workshop on Deep Learning in Medical Image Analysis, 219-227, 2016 Cited: 3
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2016
Segmenting biological structures from microscopy images
US Patent 9,443,128, 2016
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2016
A continuous linear optimal transport approach for pattern analysis in image datasets
Pattern recognition 51, 453-462, 2016 Cited: 92
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2016
Detecting and segmenting cell nuclei in two-dimensional microscopy images
Journal of pathology informatics 7 (1), 42, 2016 Cited: 29
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2016
Sliced Wasserstein kernels for probability distributions
Proceedings of the IEEE conference on computer vision and pattern …, 2016 Cited: 272
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2015
The radon cumulative distribution transform and its application to image classification
IEEE transactions on image processing 25 (2), 920-934, 2015 Cited: 125
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2015
Automated learning of subcellular variation among punctate protein patterns and a generative model of their relation to microtubules
PLoS computational biology 11 (12), e1004614, 2015 Cited: 31
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2015
Valproic acid limits pancreatic recovery after pancreatitis by inhibiting histone deacetylases and preventing acinar redifferentiation programs
The American journal of pathology 185 (12), 3304-3315, 2015 Cited: 49
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2015
Joint modeling of cell and nuclear shape variation
Molecular Biology of the Cell 26 (22), 4046-4056, 2015 Cited: 45
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2015
PCA-Based Super-Resolution in Transport Space
Computational Optical Sensing and Imaging, CTh3E. 2, 2015
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2015
The influence of surgical correction on white matter microstructural integrity in rabbits with familial coronal suture craniosynostosis
Neurosurgical focus 38 (5), E3, 2015 Cited: 13
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2015
A symmetric deformation-based similarity measure for shape analysis
2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), 314-318, 2015 Cited: 3
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2015
Localizing and extracting filament distributions from microscopy images
Journal of microscopy 258 (1), 13-23, 2015 Cited: 32
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2015
Computational analysis of cell images
Cytometry. Part A: the journal of the International Society for Analytical …, 2015 Cited: 2
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2015
Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens
Cytometry Part A 87 (4), 326-333, 2015 Cited: 45
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2015
Texton analysis for mass classification in mammograms
Pattern Recognition Letters 52, 87-93, 2015 Cited: 47
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2015
Transport-based single frame super resolution of very low resolution face images
Proceedings of the IEEE Conference on computer vision and pattern …, 2015 Cited: 127
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2014
Extraction of individual filaments from 2D confocal microscopy images of flat cells
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (3 …, 2014 Cited: 5
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2014
A computer-based automated algorithm for assessing acinar cell loss after experimental pancreatitis
PloS one 9 (10), e110220, 2014 Cited: 12
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2014
CIF: Small: Transport and other Lagrangian transforms for signal analysis and discrimination
NSF Award 14 (1421502), 21502, 2014
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2014
Maximum empirical likelihood estimation of time delay in independently and identically distributed noise
IET Signal Processing 8 (7), 720-728, 2014 Cited: 7
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2014
Accurate diagnosis of thyroid follicular lesions from nuclear morphology using supervised learning
Medical image analysis 18 (5), 772-780, 2014 Cited: 96
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2014
Localizing and extracting filament distributions from microscopy images (Retraction of vol 250, pg 57, 2013)
JOURNAL OF MICROSCOPY 254 (3), 166-166, 2014
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2014
Cancer diagnosis by nuclear morphometry using spatial information
Pattern recognition letters 42, 115-121, 2014 Cited: 40
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2014
Learning and visualizing statistical relationships between protein distributions from microscopy images
2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), 381-384, 2014 Cited: 3
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2014
Temporal information inference from static high-content fluorescent microscopy
2014 40th Annual Northeast Bioengineering Conference (NEBEC), 1-2, 2014
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2014
Quantifying and visualizing variations in sets of images using continuous linear optimal transport
Medical Imaging 2014: Image Processing 9034, 814, 2014 Cited: 1
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2014
Novel computer-aided diagnosis of mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens
Medical Imaging 2014: Digital Pathology 9041, 221-226, 2014 Cited: 3
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2014
Robust efficient estimation of heart rate pulse from video
Biomedical optics express 5 (4), 1124-1135, 2014 Cited: 132
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2014
Detecting and visualizing cell phenotype differences from microscopy images using transport-based morphometry
Proceedings of the National Academy of Sciences 111 (9), 3448-3453, 2014 Cited: 119
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2014
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2014
Carnegie Mellon University bioimaging day 2014: Challenges and opportunities in digital pathology
Journal of pathology informatics 5 (1), 32, 2014 Cited: 16
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2013
A Rapid Computer-Based Automated Algorithm for Assessing Acinar Dropout After Experimental Pancreatitis
PANCREAS 42 (8), 1348-1348, 2013
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2013
Optimized Nonlinear Discriminant Analysis (ONDA) for Supervised Pixel Classification
IEEE Signal Processing Letters 20 (12), 1155-1158, 2013
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2013
New methods for quantifying and visualizing information from images of cells: An overview
2013 35th Annual International Conference of the IEEE Engineering in …, 2013 Cited: 4
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2013
A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching
Cytometry Part A 83 (5), 495-507, 2013 Cited: 96
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2013
Active Learning for Drug Discovery
Carnegie Mellon University, 2013 Cited: 1
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2013
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2013
A linear optimal transportation framework for quantifying and visualizing variations in sets of images
International journal of computer vision 101 (2), 254-269, 2013 Cited: 318
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2012
Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines
PloS one 7 (11), e50292, 2012 Cited: 35
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2012
A linear transport-based embedding method for analyzing biomedical images
2012 Conference Record of the Forty Sixth Asilomar Conference on Signals …, 2012
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2012
High Throughput Arrays for Rapid Characterization of Solution Processable Transparent Conducting Electrodes
Small (Weinheim an der Bergstrasse, Germany) 8 (24), 3746, 2012 Cited: 9
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2012
Toward the virtual cell: automated approaches to building models of subcellular organization “learned” from microscopy images
Bioessays 34 (9), 791-799, 2012 Cited: 46
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2012
Altered cell mechanics from the inside: dispersed single wall carbon nanotubes integrate with and restructure actin
Journal of functional biomaterials 3 (2), 398-417, 2012 Cited: 45
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2012
A template matching approach for segmenting microscopy images
2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), 768-771, 2012 Cited: 18
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2012
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2011
Computational image analysis of nuclear morphology associated with various nuclear-specific aging disorders
Nucleus 2 (6), 570-579, 2011 Cited: 40
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2011
Penalized fisher discriminant analysis and its application to image-based morphometry
Pattern recognition letters 32 (15), 2128-2135, 2011 Cited: 50
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2011
Automated estimation of microtubule model parameters from 3-d live cell microscopy images
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011 Cited: 19
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2011
A pixel classification system for segmenting biomedical images using intensity neighborhoods and dimension reduction
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011 Cited: 23
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2011
Characterizing morphology differences from image data using a modified Fisher criterion
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011 Cited: 2
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2011
A general system for automatic biomedical image segmentation using intensity neighborhoods
International Journal of Biomedical Imaging 2011 (1), 606857, 2011 Cited: 31
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2010
An optimal transportation approach for nuclear structure-based pathology
IEEE transactions on medical imaging 30 (3), 621-631, 2010 Cited: 112
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2010
Detecting and Classifying Cancers from Image Data Using Optimal Transportation
26th Southern Biomedical Engineering Conference SBEC 2010, April 30-May 2 …, 2010
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2010
TORTOISE: an integrated software package for processing of diffusion MRI data
ISMRM 18th annual meeting 1597, 2010 Cited: 475
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2010
A generative model of microtubule distributions, and indirect estimation of its parameters from fluorescence microscopy images
Cytometry Part A: The Journal of the International Society for Advancement …, 2010 Cited: 56
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2010
Detection and classification of thyroid follicular lesions based on nuclear structure from histopathology images
Cytometry Part A: The Journal of the International Society for Advancement …, 2010 Cited: 120
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2010
A graph-based method for detecting characteristic phenotypes from biomedical images
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2010 Cited: 4
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2010
Geometric Approaches for Cancer Detection and Classification in Pediatric and Adult Lesions Based on Nuclear Structure
MODERN PATHOLOGY 23 (2), 326-326, 2010
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2010
Detection and Classification of Thyroid Follicular Lesions Based on Nuclear Structure from Histopathology Images
MODERN PATHOLOGY 23, 335A-336A, 2010
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2009
Instance-based generative biological shape modeling
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2009 Cited: 29
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2009
Indirect learning of generative models for microtubule distribution from fluorescence microscope images
ICML-UAI-COLT 2009 Workshop on Automated Interpretation and Modeling of Cell …, 2009 Cited: 1
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2008
Interpolation artifacts in sub-pixel image registration
IEEE transactions on image processing 18 (2), 333-345, 2008 Cited: 58
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2008
Intensity-based Image Registration
Introduction to Biomedical Imaging and Image Analysis, 42-431, 2008 Cited: 2
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2008
Axonal bouton modeling, detection and distribution analysis for the study of neural circuit organization and plasticity
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to …, 2008 Cited: 2
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2008
Deformation-based nonlinear dimension reduction: Applications to nuclear morphometry
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to …, 2008 Cited: 25
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2008
Multiresolution identification of germ layer components in teratomas derived from human and nonhuman primate embryonic stem cells
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to …, 2008 Cited: 23
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2008
Method and apparatus for secure digital communications using chaotic signals
US Patent App. 11/853,012, 2008 Cited: 24
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2008
Stochastic analysis of recurrence plots with applications to the detection of deterministic signals
Physica D: Nonlinear Phenomena 237 (5), 619-629, 2008 Cited: 39
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2008
Deformation‐based nuclear morphometry: Capturing nuclear shape variation in HeLa cells
Cytometry Part A: The Journal of the International Society for Analytical …, 2008 Cited: 109
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2008
Chaotic signal detection and estimation based on attractor sets: Applications to secure communications
Chaos: An Interdisciplinary Journal of Nonlinear Science 18 (1), 2008 Cited: 35
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2007
Sampling and reconstruction for biomedical image registration
2007 Conference Record of the Forty-First Asilomar Conference on Signals …, 2007 Cited: 4
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2007
Signal estimation based on mutual information maximization
2007 Conference Record of the Forty-First Asilomar Conference on Signals …, 2007 Cited: 6
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2007
The NIH MRI study of normal brain development: Performance of a population based sample of healthy children aged 6 to 18 years on a neuropsychological battery
Journal of the International Neuropsychological Society 13 (5), 729-746, 2007 Cited: 337
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2007
Interpolation artifacts in biomedical image registration
2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to …, 2007 Cited: 5
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2007
Fast global image registration using random projections
2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to …, 2007 Cited: 18
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2007
The NIH MRI study of normal brain development (Objective-2): Newborns, infants, toddlers, and preschoolers
Neuroimage 35 (1), 308-325, 2007 Cited: 253
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2007
Overview of image analysis tools and tasks for microscopy
Microscopic image analysis for life science applications, 56-67, 2007 Cited: 3
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2006
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2006
Regional distribution of measurement error in diffusion tensor imaging
Psychiatry Research: Neuroimaging 147 (1), 69-78, 2006 Cited: 104
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2006
Stochastic Analysis of Geometric Image Processing Using B-Splines
2006 IEEE International Conference on Acoustics Speech and Signal Processing …, 2006 Cited: 1
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2006
Measuring image similarity to sub-pixel accuracy
3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006 …, 2006 Cited: 10
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2006
The NIH MRI study of normal brain development
Neuroimage 30 (1), 184-202, 2006 Cited: 662
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2006
Deformable registration of abdominal CT images: tissue stiffness constraints using B-splines
Medical Imaging 2006: Image Processing 6144, 289-296, 2006 Cited: 2
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2006
Deformable registration of abdominal CT images: tissue stiffness constraints using B-splines [6144-32]
PROCEEDINGS-SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 6144 (1 …, 2006
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2005
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2005
Estimating intensity variance due to noise in registered images: applications to diffusion tensor MRI
Neuroimage 26 (3), 673-684, 2005 Cited: 71
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2005
Estimating intensity variance due to noise in registered images
Medical Imaging 2005: Image Processing 5747, 655-666, 2005 Cited: 1
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2005
An automatic method for estimating noise-induced signal variance in magnitude-reconstructed magnetic resonance images
Medical Imaging 2005: Image Processing 5747, 1136-1142, 2005 Cited: 36
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2005
Measuring image similarity in the presence of noise
Medical Imaging 2005: Image Processing 5747, 132-143, 2005 Cited: 25
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2005
Correction of motion artifact in cardiac optical mapping using image registration
IEEE Transactions on Biomedical Engineering 52 (2), 338-341, 2005 Cited: 73
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2005
Automatically estimating noise-induced signal variance in magnitude reconstructed MRI using kernel estimator
Proc. Intl. Soc. Mag. Reson. Med 13, 2254, 2005
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2005
Analytic Expressions for the Uncertainty of DTI-derived Parameters and their Validation Using Monte Carlo Methods
ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, p 46, 2005 Cited: 1
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2004
DTI measures are insensitive to the effect of neuroleptics
NEUROPSYCHOPHARMACOLOGY 29, S172-S172, 2004
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2004
New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter
Magnetic Resonance in Medicine: An Official Journal of the International …, 2004 Cited: 761
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2004
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2004
Multi-channel registration of diffusion tensor images using directional information
2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro …, 2004 Cited: 39
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2004
Non-Homogeneous Wavelet Denoising
Proc. Intl. Soc. Mag. Reson. Med 11, 2223, 2004 Cited: 1
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2004
Nonlinear registration of diffusion tensor images using directional information
Proceedings of International Society for Magnetic Resonance in Medicine 11, 1213, 2004 Cited: 2
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2004
Comprehensive approach for correction of motion and distortion in diffusion‐weighted MRI
Magnetic Resonance in Medicine: An Official Journal of the International …, 2004 Cited: 677
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2003
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2003
The adaptive bases algorithm for intensity-based nonrigid image registration
IEEE transactions on medical imaging 22 (11), 1470-1479, 2003 Cited: 560
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2003
Analyzing the contribution of cardiac pulsation to the variability of quantities derived from the diffusion tensor
Proceedings of the 11th Annual Meeting of ISMRM, Toronto, Canada, 70, 2003 Cited: 68
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2003
A comprehensive approach for multi-channel image registration
International Workshop on Biomedical Image Registration, 214-223, 2003 Cited: 49
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2002
Correction of motion artifact in cardiac optical mapping using image registration technique
Proceedings of the Second Joint 24th Annual Conference and the Annual Fall …, 2002 Cited: 2
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2002
Adaptive-bases algorithm for nonrigid image registration
Medical Imaging 2002: Image Processing 4684, 933-944, 2002 Cited: 14
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2002
Multiscale approaches for diffusion tensor MRI
Proceedings of the 11th Annual Meeting of ISMRM, 1176, 2002 Cited: 1
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2001
Adaptive free-form deformation for interpatient medical image registration
Medical Imaging 2001: Image Processing 4322, 1578-1587, 2001 Cited: 29
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2001
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2000
Multiscale nonrigid data registration using adaptive basis functions
Wavelet Applications in Signal and Image Processing VIII 4119, 1076-1083, 2000 Cited: 4
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1998
Wavelet denoising of epicardial fluorescence imaging
Wavelet Applications in Signal and Imaging Processing VI 3458, 267-273, 1998 Cited: 7
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Partitioning signal classes using transport transforms for data analysis and machine learning
2021 Joint Mathematics Meetings (JMM), 0
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Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens.
Carnegie Mellon University, 0
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